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TOP > About the Species(Nicotiana tabacum var. TN90) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Nicotiana tabacum

CDS Sequence

CDS ID

lcl|NW_015852613.1_cds_XP_016511908.1_24602
CDS Infomation

[gene=LOC107829009] [db_xref=GeneID:107829009] [protein=granule-bound starch synthase 1, chloroplastic/amyloplastic-like] [protein_id=XP_016511908.1] [location=join(4376..4729,4863..4943,5026..5124,5238..5327,5417..5480,5566..5666,5758..5867,5951..6194,6289..6465,6556..6747,6886..6972,7084..7212,7302..7418)] [gbkey=CDS]
Sequence

ATGGCAAGCATCACAGCTTCACACTTTGTGTCAAGAAGCTCAAATGTCTGCAGTGGAGCA
GCCTCTGTAGACACCAGAGCAAACTTGTCACAGATAGGGCTGAGGAACCATGCTCTGACT
CACAATGGGTTGAGGGCTGTTAACAAGGTTGATATGCTGCAATCAAGAACTAATACTAAG
GTAACAGCTAAGAAATCCAGCAAACAGGTATCCGGAACTGAGATGGAGAGGCCATCAGGT
ACCATCGTTTGTGGAAAGGGGATGAATGTGATCCTTGTTGGAACTGAGGTGGGTCCTTGG
AGCAAAACTGGCGGGCTAGGTGATGTTCTTGGTGGACTACCACCAGCCTTGGCAGCCCGT
GGACATCGCGTAATGACAATATCTCCCCGTTATGACCAATACAAAGATGCTTGGGATACT
AGCGTTGTCGTTGAGATCAAAGTTGGAGACAAAATTGAAATTGTTCGTTTCTTTCACTGC
TATAAACGTGGGGTTGATCGTGTTTTTGTTGACCACCCAATGTTCTTGGAGAAAGTTTGG
GGCAAAACTGCTGCAAAAATCTATGGCCCCAAAGCTGGACAAGATTATTTGGACAATGAA
CTTAGGTTCAGCTTGTTGTGTCAAGCAGCTCTAGAAGCACCTAGAGTTCTGAATTTGAAC
TGCAGCGAATACTTCTCAGGACCATATGGAGAGGATGTTGTCTTCATTGCCAACGATTGG
CACACTGCTCTCCTTCCCTGCTACCTGAAGTCGATGTACCAATCAAGAGGAATCTATATG
AATGCCAAGGTCGCTTTCTGCATCCATAACATCGCCTACCAAGGGCGATTTGCTTTTTCA
GACTTCTCTCTTCTCAATCTGCCTGATGAATACAAGAGTTCTTTCGATTTCATTGATGGA
TATGAAAAGCCTGTTAAAGGTAGGAAAATCAACTGGATGAAGGCTGGGATATTAGAATCA
CATAGGGTGGTTACTGTGAGCCCACACTATGCCCAAGAACTTGTTTCCGGTGTTGACAAG
GGTGTTGAATTGGATAACGTCCTTCGTAAGACTTGCATAACTGGGATTGTGAATGGCATG
GATATCCAAGAATGGAACCCAGCAACTGACAAATACACCGATGTCAATTATGATATAACC
ACTGTTATGGATGCAAAGCCTTTACTGAAGGAGGCTCTTCAAGCAGCAGTTGGCTTGCCT
GTTGACAGGAAGATTCCTTTGATTGGATTCATTGGCAGACTTGAAGAGCAGAAAGGTTCT
GACATTCTTGTTGCTGCAATTCACAAGTTCATCGGACTGGATGTTCAAATAATAGTCCTT
GGAACTGGCAAAAAGGAGTTCGAACAGGAGATTGAACAGCTCGAAGTGTTGTATCCTAAC
AAAGCTAAAGGAGTGGCAAAATTCAATGTCCCTTTGGCTCACATGATCACCGCTGGTGCT
GATTTTATGTTGGTTCCAAGCAGATTTGAACCTTGTGGTCTCATTCAGTTACATGCTATG
CGCTATGGAACAGTGCCAATCTGTGCCTCAACTGGTGGACTTGTTGACACTGTGAAAGAA
GGCTATACTGGATTCCATATGGGAGCATTCAGCGTTGAATGTGATGTTGTTGACCCAGCT
GATGTGCTTAAGATAGTAACAACAGTTGCTAGAGCTCTTGAAATCTATGGCACTCTCGCG
TTTGCTGAGATGATCAAAAACTGCATGTCACAGGAGCTCTCCTGGAAGGAACCTGCCAAG
AAATGGGAGACATTACTATTGAGCTTAGGAGCTGCTGGTAGTGAAGCCGGTGTTGAAGGG
GATGAAATCGCGCCACTTGCCAAGGAAAATGTGGCCACTCCTTAA

Peptide Sequence

PEP ID

XP_016511908.1
PEP Infomation

PREDICTED: granule-bound starch synthase 1, chloroplastic/amyloplastic-like [Nicotiana tabacum]
Sequence

MASITASHFVSRSSNVCSGAASVDTRANLSQIGLRNHALTHNGLRAVNKVDMLQSRTNTK
VTAKKSSKQVSGTEMERPSGTIVCGKGMNVILVGTEVGPWSKTGGLGDVLGGLPPALAAR
GHRVMTISPRYDQYKDAWDTSVVVEIKVGDKIEIVRFFHCYKRGVDRVFVDHPMFLEKVW
GKTAAKIYGPKAGQDYLDNELRFSLLCQAALEAPRVLNLNCSEYFSGPYGEDVVFIANDW
HTALLPCYLKSMYQSRGIYMNAKVAFCIHNIAYQGRFAFSDFSLLNLPDEYKSSFDFIDG
YEKPVKGRKINWMKAGILESHRVVTVSPHYAQELVSGVDKGVELDNVLRKTCITGIVNGM
DIQEWNPATDKYTDVNYDITTVMDAKPLLKEALQAAVGLPVDRKIPLIGFIGRLEEQKGS
DILVAAIHKFIGLDVQIIVLGTGKKEFEQEIEQLEVLYPNKAKGVAKFNVPLAHMITAGA
DFMLVPSRFEPCGLIQLHAMRYGTVPICASTGGLVDTVKEGYTGFHMGAFSVECDVVDPA
DVLKIVTTVARALEIYGTLAFAEMIKNCMSQELSWKEPAKKWETLLLSLGAAGSEAGVEG
DEIAPLAKENVATP

Transcript Sequence

Gene sequence data has not been registered.